Tag Archives: University of Colorado at Boulder

Humans Are Leaving Behind a Frozen Legacy of Microbes on Mount Everest

Located nearly 5 miles above sea level in the Himalayas, the barren, wind-swept depression between Mount Everest and its neighboring summit, Lhotse, remains devoid of snow. At the South Col, hundreds of thrill-seekers set up their final camp annually, preparing to ascend the world’s highest mountain from the southeast flank.

New research led by the University of Colorado Boulder indicates that these adventurers are inadvertently leaving behind a frozen signature of resilient microbes. These microorganisms can endure extreme conditions at high altitudes and remain dormant in the soil for decades, or potentially even centuries.

The research not only highlights an invisible impact of tourism on the world’s highest mountain, but could also lead to a better understanding of environmental limits to life on Earth, as well as where life may exist on other planets or cold moons. The findings were published last month in Arctic, Antarctic, and Alpine Research, a journal published on behalf of the Institute of Arctic and Alpine Research (INSTAAR) at CU Boulder.

“There is a human signature frozen in the microbiome of Everest, even at that elevation,” said Steve Schmidt, senior author on the paper and professor of ecology and evolutionary biology.

In decades past, scientists have been unable to conclusively identify human-associated microbes in samples collected above 26,000 feet. This study marks the first time that next-generation gene sequencing technology has been used to analyze soil from such a high elevation on Mount Everest, enabling researchers to gain new insight into almost everything and anything that’s in them.

The researchers weren’t surprised to find microorganisms left by humans. Microbes are everywhere, even in the air, and can easily blow around and land some distance away from nearby camps or trails.

“If somebody even blew their nose or coughed, that’s the kind of thing that might show up,” said Schmidt.

What they were impressed by, however, was that certain microbes which have evolved to thrive in warm and wet environments like our noses and mouths were resilient enough to survive in a dormant state in such harsh conditions.

This team of CU Boulder researchers—including Schmidt, lead author Nicholas Dragone and Adam Solon, both graduate students in the Department of Ecology and Evolutionary Biology and the Cooperative Institute for Research in Environmental Science (CIRES)—study the cryobiosphere: Earth’s cold regions and the limits to life in them. They have sampled soils everywhere from Antarctica and the Andes to the Himalayas and the high Arctic. Usually, human-associated microbes don’t show up in these places to the extent they appeared in the recent Everest samples.

Schmidt’s work over the years connected him with researchers who were headed to Everest’s South Col in May of 2019 to set up the planet’s highest weather station, established by the National Geographic and Rolex Perpetual Planet Everest Expedition.

He asked his colleagues: Would you mind collecting some soil samples while you’re already there?

So Baker Perry, co-author, professor of geography at Appalachian State University, and a National Geographic Explorer, hiked as far away from the South Col camp as possible to scoop up some soil samples to send back to Schmidt.

Dragone and Solon then analyzed the soil in several labs at CU Boulder. Using next-generation gene sequencing technology and more traditional culturing techniques, they were able to identify the DNA of almost any living or dead microbes in the soils. They then carried out extensive bioinformatics analyses of the DNA sequences to determine the diversity of organisms, rather than their abundances.

Most of the microbial DNA sequences they found were similar to hardy, or “extremophilic” organisms previously detected in other high-elevation sites in the Andes and Antarctica. The most abundant organism they found using both old and new methods was a fungus in the genus Naganishia that can withstand extreme levels of cold and UV radiation.

But they also found microbial DNA for some organisms heavily associated with humans, including Staphylococcus, one of the most common skin and nose bacteria, and Streptococcus, a dominant genus in the human mouth.

At high elevations, microbes are often killed by ultraviolet light, cold temperatures, and low water availability. Only the hardiest critters survive. Most—like the microbes carried up great heights by humans—go dormant or die, but there is a chance that organisms like Naganishia may grow briefly when water and the perfect ray of sunlight provides enough heat to help them momentarily prosper. But even for the toughest of microbes, Mount Everest is a Hotel California: “You can check out any time you like/ But you can never leave.”

The researchers don’t expect this microscopic impact on Everest to significantly affect the broader environment. But this work does carry implications for the potential for life far beyond Earth, if one day humans step foot on Mars or beyond.

“We might find life on other planets and cold moons,” said Schmidt. “We’ll have to be careful to make sure we’re not contaminating them with our own.”

Reference: “Genetic analysis of the frozen microbiome at 7900 m a.s.l., on the South Col of Sagarmatha (Mount Everest)” by Nicholas B. Dragone, L. Baker Perry, Adam J. Solon, Anton Seimon, Tracie A. Seimon and Steven K. Schmidt, 16 February 2023, Arctic, Antarctic, and Alpine Research.
DOI: 10.1080/15230430.2023.2164999

The study was funded by the National Geographic and Rolex Perpetual Planet Everest Expedition, the Department of Ecology and Evolutionary Biology, and the University of Colorado Boulder Libraries Open Access Fund

Scientists Discover Unique Microbial Community on Short-Lived Former Island

In 2015, an underwater volcano in the South Pacific erupted, giving rise to the short-lived Hunga Tonga Hunga Ha’apai island. The University of Colorado Boulder and the Cooperative Institute for Research in Environmental Sciences (CIRES) spearheaded a research team that seized the uncommon chance to investigate the initial microbial inhabitants of a recently formed landmass. Surprisingly, they detected a unique microbial population that can metabolize sulfur and atmospheric gases, akin to organisms present in deep-sea hydrothermal vents or geothermal hot springs.

“These types of volcanic eruptions happen all over the world, but they don’t usually produce islands. We had an incredibly unique opportunity,” said Nick Dragone, CIRES Ph.D. student and lead author of the study recently published in mBio. “No one had ever comprehensively studied the microorganisms on this type of island system at such an early stage before.”

“Studying the microbes that first colonize islands provides a glimpse into the earliest stage of ecosystem development – before even plants and animals arrive,” said Noah Fierer, CIRES fellow, professor of ecology and evolutionary biology at CU Boulder and corresponding author on the study.

A multi-institutional team of researchers on the ground collected soil samples from the island, then shipped them to CU Boulder’s campus. Dragone and Fierer could then extract and sequence DNA samples from the samples.

“We didn’t see what we were expecting,” said Dragone. “We thought we’d see organisms you find when a glacier retreats, or cyanobacteria, more typical early colonizer species—but instead we found a unique group of bacteria that metabolize sulfur and atmospheric gases.”

And that wasn’t the only unexpected twist in this work: On January 15, 2022, seven years after it formed, the volcano erupted again, obliterating the entire landmass in the largest volcanic explosion of the 21st century. The eruption completely wiped out the island and eliminated the option for the team to continue monitoring their site.

“We were all expecting the island to stay,” said Dragone. “In fact, the week before the island exploded we were starting to plan a return trip.”

However, the same fickle nature of the Hunga Tonga Hunga Ha’apai (HTHH) that made it explode also explains why the team found such a unique set of microbes on the island. Hunga Tonga was volcanically formed, like Hawaii.

“One of the reasons why we think we see these unique microbes is because of the properties associated with volcanic eruptions: lots of sulfur and hydrogen sulfide gas, which are likely fueling the unique taxa we found,” Dragone said. “The microbes were most similar to those found in hydrothermal vents, hot springs like Yellowstone, and other volcanic systems. Our best guess is the microbes came from those types of sources.”

The expedition to HTHH required close collaboration with members of the government of the Kingdom of Tonga, who were willing to work with researchers to collect samples from land normally not visited by international guests. Coordination took years of work by collaborators at the Sea Education Association and NASA: a Tongan observer must approve and oversee any sample collection that takes place within the Kingdom.

“This work brought in so many people from around the world, and we learned so much. We are of course disappointed that the island is gone, but now we have a lot of predictions about what happens when islands form,” said Dragone. “So if something formed again, we would love to go there and collect more data. We would have a game plan of how to study it.”

Reference: “The Early Microbial Colonizers of a Short-Lived Volcanic Island in the Kingdom of Tonga” by Nicholas B. Dragone, Kerry Whittaker, Olivia M. Lord, Emily A. Burke, Helen Dufel, Emily Hite, Farley Miller, Gabrielle Page, Dan Slayback and Noah Fierer, 11 January 2023, mBio.
DOI: 10.1128/mbio.03313-22